Selected talks and presentations, handouts

See also my list of publications for downloadable articles.

Forthcoming meetings

Meetings where I have participated and presented

• Computer Science Theory Days 2005, Koke. Ettekanne: Bioinformatics of Gene Regulation

• 16.17. oktoober 2004 Seminar Formaalsed meetodid tarkvara- ja süsteemitehnikas Pedase. Ettekanne: (Bio)Informaatikast ülikoolis ja ettevõtluses
• 1.-3.10.2004 Theory days @ Veskisilla
• Intelligent Systems for Molecular Biology (ISMB-04), Glasgow - 2 posters.
• ATD project Kick-off meeting, Marseille, France, March 23, 2004.
• 2004 World Wide Biobank Summit, France, IBM, La Gaude, March 17,18, 2004
• Microarray Data Analysis - a NMC/CBU Course. Bergen, Norway, February 2.-6., 2004

• Data Mining and Microarrays: EBI Industry support workshop. EBI (Dec. 8-9)
• V Taller de Bioinformatica Habana, 2003: Bioinformatics of Microarrays and Regulatory squence analysis, Nov. 17-21, Cuba. (3 lectures and 1 practical)
• Biotechnology Havana 2003. Biotechnology Havana 2003: Medical applications of Biotechnology. Gene Regulation Bioinformatics.
• Estonian Computer Sceience Theory days at Pedase. 3.-5.10.2003 Presentation: Studying gene regulation using data mining techniques.
• Microarray data: untapped powers and hidden weaknesses Sept 8.-9. 2003, Leuven, Belgium (presentation). Meeting report and presentations web site
• ISSCB 2003, Warsaw, Aug 31-Sep 5 (4 lectures)
  • Microarray data standards, databases, analysis
  • Pattern discovery and its applications to promoter analysis, protein function analysis
  • Functional genomics and data integration
  • Population genetics and pharmacogenetics based on EGeen and Estonian Genome Project experience
• World genetics Congr. Melbourne (Jul 6-11) (no presentation)
• ISMB03 Brisbane (Jun 27-Jul 3) (no presentation)
• Nordic Brain Microarrays - Saue, Tallinn, Estonia
• Finnish MA data analysis - May 26-27
• SocBin 2003, May 22-24, Helsinki
• EMBO Practical Course on Analysis and Informatics of Microarray Data 16-22, March 2003 Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
• MicroArray Week, Kuopio 27.1.-31.1.2003 web Mining the Functional Genomics Data

• Keeletehnoloogia päev - Eesti keeletehnoloogia: tänased tulemused ja homsed visioonid 17.12.2002 Tartus. [PDF]
• Microarrays and Data Mining, 10 - 11 December 2002, EBI, Hinxton, UK (main organizer)
• Eesti Statistika Seltsi aastakonverents, Otepää
• MGED 5, Tokio, Japan September 24-27, 2002
• From Visions to Solutions, September 18-20, Pärnu, Estonia
• Estonian Computer Science Summer School, August 2002;
• EMBO course on Microarrays, Heidelberg (1-8.June 02).
• Bioinformatics and computational biology, Madrid 25. and 26 of April 2002;
• JPGD Journées de post-génomique de la DOUA 21-22.03.2002, Lyon, France
• MGED 4 in Boston 13-16. Feb. 2002. ArrayExpress talk [Powerpoint presentation]
  
  

• EMBO course in Hinxton (29.10.-3.11.01)
• EMBO course in Heidelberg (29.9-6.10)
• Gene Technology Forum 2001, Estonia, Tartu
• CoMBI summer course, Finland
• ISMB01 Copenhagen, July 21-25
• Berlin 28-30 June;
• HPCN: Bioinformatics workshop Amsterdam , June 25-27;
• Schola Biotheoretica, Estonia, May 2001
• ECNP, Nice 15-18. 03 2001
• MGED III, Stanford 29-30.03, 2001
• HUGO HGM2001, Edinburgh, April 19-22
• Lausanne, 1-2 March, 2001, Graduate Course, lecture + practicals
  gzipped PostScript, 2 slides/page, 36 pages
• Uppsala, January 2001, Graduate Course, lecture + practicals
  
  

• Beyond the Identification of Transcribed Sequences: Functional and Expression Analysis
• EMBO course Genome Analysis by High Throughput Techniques 6.12.2000 Handouts
• Data mining in Bioinformatics: EBI Industry Associates programme workshop Nov. 1.-2., 2000
• EMBO course (DNA Microarrays: Applications and Data Analysis) Lecture, demo, and practicals, Oct. 31.2000
• Gene forum Tartu, Estonia (September 21.-22, 2000) (Estonian Genome Foundation)
• The third annual bioinformatics symposium - Microarrays and datamining 11-12 Sep 2000 Helsinki (includes video).
• ISMB-2000 La Jolla, California - talk (August 2000)
• TRI-TRYP (18.-22.05) (presentation)
• MGED (25.-27.05) (poster)
• Gene prediction (1.-2.06) (poster)
• MASAMB - Mathematical and Statistical Aspects of Molecular Biology, April 4, 2000 (presentation)
• Functional Genomics and Bioinformatics Symposium in Turku, Finland (December 1999) (presentation)
• HUGO Microarray meeting in Tartu, Estonia June 1999 (about expression data analysis and EBI microarray database initiative) (presentation)

Expression Profiler

• Computational Biology seminar series, Cambridge, 8.3.2000 (gzipped Postscript, file size ~5MB)
• EBI seminar series, Hinxton, February 2000
• Presentation at Roche, January 2000
• Institute of Cybernetics, Tallinn - 2h seminar on Bioinformatics (Jan 6th 2000)
• Functional Genomics and Bioinformatics Symposium in Turku, Finland (December 1999)
• Biostandards meetings at EBI (September 1999, December 1999)
• Poster and demo at Conference on Data mining in Bioinformatics 1999, Hinxton
• Poster at Microarray meeting Arizona, USA, September 1999

Pattern discovery

• EBI Industry seminar on Pattern discovery, Dec. 1998. About suffix trees and arrays, pattern discovery algorithm SPEXS.

General bioinformatics

• Institute of Cybernetics, Tallinn, Estonia - 2h seminar on Bioinformatics, January 6th, 2000

My publications

Comments, suggestions, improvement ideas etc. are warmly welcome.